From 226a5924b4ecfeb6a83d5aea934c6cee921c1394 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Thu, 16 Nov 2017 11:59:28 -0600
Subject: [PATCH] Fix peak outputs.
---
workflow/main.nf | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index d54a92e..89d7171 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -365,11 +365,12 @@ process consensusPeaks {
output:
- file '*.narrowPeak' into consensusPeaks
+ file '*.replicated.*' into consensusPeaks
+ file '*.rejected.*' into rejectedPeaks
file("design_diffPeaks.tsv") into designFilePaths
script:
-
+
"""
python3 $baseDir/scripts/overlap_peaks.py -d $peaksDesign -f preDiffDesign
"""
--
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