From 200ded1330a1bcf960acfc31ff18497eec5515be Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Tue, 8 Jan 2019 15:59:23 -0600
Subject: [PATCH] Fixed test data and test output.
---
test_data/design_diff_PE.txt | 2 +-
workflow/tests/test_annotate_peaks.py | 6 +++---
workflow/tests/test_call_peaks_macs.py | 2 +-
3 files changed, 5 insertions(+), 5 deletions(-)
diff --git a/test_data/design_diff_PE.txt b/test_data/design_diff_PE.txt
index 7b6f73c..a076582 100644
--- a/test_data/design_diff_PE.txt
+++ b/test_data/design_diff_PE.txt
@@ -4,4 +4,4 @@ ENCLB568IYX ENCSR729LGA MCF-7 SP1 None 2 ENCLB336TVW ENCFF330MCZ.fastq.gz ENCFF2
ENCLB678IDC ENCSR217LRF MCF-7 Control None 1 ENCLB678IDC ENCFF002DTU.fastq.gz ENCFF002EFI.fastq.gz
ENCLB336TVW ENCSR217LRF MCF-7 Control None 2 ENCLB336TVW ENCFF002EFG.fastq.gz ENCFF002DTS.fastq.gz
ENCLB552ACZ ENCSR757EMK MCF-7 SUZ12 None 1 ENCLB678IDC ENCFF833EZX.fastq.gz ENCFF161HBP.fastq.gz
-ENCLB568IYX ENCSR757EMK MCF-7 SUZ12 None 2 ENCLB336TVW ENCFF776KZU.fastq.gz ENCFF119KHM.fastq.gz
+ENCLB872TQR ENCSR757EMK MCF-7 SUZ12 None 2 ENCLB336TVW ENCFF776KZU.fastq.gz ENCFF119KHM.fastq.gz
diff --git a/workflow/tests/test_annotate_peaks.py b/workflow/tests/test_annotate_peaks.py
index 6fd5c13..30ff74f 100644
--- a/workflow/tests/test_annotate_peaks.py
+++ b/workflow/tests/test_annotate_peaks.py
@@ -21,8 +21,8 @@ def test_annotate_peaks_singleend():
@pytest.mark.pairedend
def test_annotate_peaks_pairedend():
- assert os.path.exists(os.path.join(test_output_path, 'ENCSR217LGA.chipseeker_pie.pdf'))
- assert os.path.exists(os.path.join(test_output_path, 'ENCSR217LGA.chipseeker_upsetplot.pdf'))
- annotation_file = test_output_path + 'ENCSR217LGA.chipseeker_annotation.csv'
+ assert os.path.exists(os.path.join(test_output_path, 'ENCSR729LGA..chipseeker_pie.pdf'))
+ assert os.path.exists(os.path.join(test_output_path, 'ENCSR729LGA..chipseeker_upsetplot.pdf'))
+ annotation_file = test_output_path + 'ENCSR729LGA..chipseeker_annotation.csv'
assert os.path.exists(annotation_file)
assert utils.count_lines(annotation_file) == 25391
diff --git a/workflow/tests/test_call_peaks_macs.py b/workflow/tests/test_call_peaks_macs.py
index 9b22e9e..71358bc 100644
--- a/workflow/tests/test_call_peaks_macs.py
+++ b/workflow/tests/test_call_peaks_macs.py
@@ -21,4 +21,4 @@ def test_call_peaks_macs_pairedend():
assert os.path.exists(os.path.join(test_output_path, 'ENCLB568IYX.fc_signal.bw'))
assert os.path.exists(os.path.join(test_output_path, 'ENCLB568IYX.pvalue_signal.bw'))
peak_file = test_output_path + 'ENCLB568IYX_peaks.narrowPeak'
- assert utils.count_lines(peak_file) == 138827
+ assert utils.count_lines(peak_file) == 112652
--
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