diff --git a/test_data/design_diff_PE.txt b/test_data/design_diff_PE.txt
index 7b6f73c61e93e13416b0f20f093ee94b89627cda..a0765823e6396311f55fc53b636e80f290c571e3 100644
--- a/test_data/design_diff_PE.txt
+++ b/test_data/design_diff_PE.txt
@@ -4,4 +4,4 @@ ENCLB568IYX	ENCSR729LGA	MCF-7	SP1	None	2	ENCLB336TVW	ENCFF330MCZ.fastq.gz	ENCFF2
 ENCLB678IDC	ENCSR217LRF	MCF-7	Control	None	1	ENCLB678IDC	ENCFF002DTU.fastq.gz	ENCFF002EFI.fastq.gz
 ENCLB336TVW	ENCSR217LRF	MCF-7	Control	None	2	ENCLB336TVW	ENCFF002EFG.fastq.gz	ENCFF002DTS.fastq.gz
 ENCLB552ACZ	ENCSR757EMK	MCF-7	SUZ12	None	1	ENCLB678IDC	ENCFF833EZX.fastq.gz	ENCFF161HBP.fastq.gz
-ENCLB568IYX	ENCSR757EMK	MCF-7	SUZ12	None	2	ENCLB336TVW	ENCFF776KZU.fastq.gz	ENCFF119KHM.fastq.gz
+ENCLB872TQR	ENCSR757EMK	MCF-7	SUZ12	None	2	ENCLB336TVW	ENCFF776KZU.fastq.gz	ENCFF119KHM.fastq.gz
diff --git a/workflow/tests/test_annotate_peaks.py b/workflow/tests/test_annotate_peaks.py
index 6fd5c131c2d199d34cb8e2c7a92c7e67aaed5be4..30ff74f037e994b8e939314983e964b98eb20c0b 100644
--- a/workflow/tests/test_annotate_peaks.py
+++ b/workflow/tests/test_annotate_peaks.py
@@ -21,8 +21,8 @@ def test_annotate_peaks_singleend():
 
 @pytest.mark.pairedend
 def test_annotate_peaks_pairedend():
-    assert os.path.exists(os.path.join(test_output_path, 'ENCSR217LGA.chipseeker_pie.pdf'))
-    assert os.path.exists(os.path.join(test_output_path, 'ENCSR217LGA.chipseeker_upsetplot.pdf'))
-    annotation_file = test_output_path + 'ENCSR217LGA.chipseeker_annotation.csv'
+    assert os.path.exists(os.path.join(test_output_path, 'ENCSR729LGA..chipseeker_pie.pdf'))
+    assert os.path.exists(os.path.join(test_output_path, 'ENCSR729LGA..chipseeker_upsetplot.pdf'))
+    annotation_file = test_output_path + 'ENCSR729LGA..chipseeker_annotation.csv'
     assert os.path.exists(annotation_file)
     assert utils.count_lines(annotation_file) == 25391
diff --git a/workflow/tests/test_call_peaks_macs.py b/workflow/tests/test_call_peaks_macs.py
index 9b22e9e29f0a53a800248eaecf4e1f955b42d7b7..71358bc045801d23d28b8f7385c5ef9f608347b6 100644
--- a/workflow/tests/test_call_peaks_macs.py
+++ b/workflow/tests/test_call_peaks_macs.py
@@ -21,4 +21,4 @@ def test_call_peaks_macs_pairedend():
     assert os.path.exists(os.path.join(test_output_path, 'ENCLB568IYX.fc_signal.bw'))
     assert os.path.exists(os.path.join(test_output_path, 'ENCLB568IYX.pvalue_signal.bw'))
     peak_file = test_output_path + 'ENCLB568IYX_peaks.narrowPeak'
-    assert utils.count_lines(peak_file) == 138827
+    assert utils.count_lines(peak_file) == 112652