From 1f604a6a116d29af377e019f4ab8829b1a342aff Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Sun, 6 Jan 2019 21:51:48 -0600
Subject: [PATCH] Update R script output.
---
workflow/scripts/annotate_peaks.R | 2 +-
workflow/scripts/diff_peaks.R | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/workflow/scripts/annotate_peaks.R b/workflow/scripts/annotate_peaks.R
index 3629c4a..7680287 100644
--- a/workflow/scripts/annotate_peaks.R
+++ b/workflow/scripts/annotate_peaks.R
@@ -17,7 +17,7 @@ args <- commandArgs(trailingOnly=TRUE)
# Check input args
if (length(args) != 2) {
- stop("Usage: annotate_peaks.R [ annotate_design.tsv ] [ genome_assembly ]", call.=FALSE)
+ stop("Usage: annotate_peaks.R annotate_design.tsv genome_assembly", call.=FALSE)
}
design_file <- args[1]
diff --git a/workflow/scripts/diff_peaks.R b/workflow/scripts/diff_peaks.R
index 76caa95..aae1d24 100644
--- a/workflow/scripts/diff_peaks.R
+++ b/workflow/scripts/diff_peaks.R
@@ -8,7 +8,7 @@ args <- commandArgs(trailingOnly=TRUE)
# Check input args
if (length(args) != 1) {
- stop("Usage: diff_peaks.R [ annotate_design.tsv ] ", call.=FALSE)
+ stop("Usage: diff_peaks.R annotate_design.tsv ", call.=FALSE)
}
# Build DBA object from design file
--
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