diff --git a/workflow/scripts/runMemechip.py b/workflow/scripts/runMemechip.py
index c600c577177838810010f174782d8cd6af48c29c..6c4c6b29de82cc8e57a16e01846b86f4de078a19 100644
--- a/workflow/scripts/runMemechip.py
+++ b/workflow/scripts/runMemechip.py
@@ -11,7 +11,6 @@ import logging
 import twobitreader
 import subprocess
 import pandas as pd
-import pybedtools
 from Bio import SeqIO
 from Bio.Seq import Seq
 from Bio.SeqRecord import SeqRecord