From 14a100615780e285544cf5b3b91db3966fab3ed9 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Thu, 15 Feb 2018 09:01:10 -0600
Subject: [PATCH] Fix path.

---
 .gitlab-ci.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 0929f06..c81247a 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -18,9 +18,9 @@ single_end_mouse:
   script:
   - nextflow run workflow/main.nf
   - pytest -m integration
-  - pytest --cov=./workflow/scripts 
+  - pytest --cov=./workflow/scripts
 
 paired_end_human:
   stage: integration
   script:
-  - nextflow run workflow/main.nf --designFile "$baseDir/../test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38'
+  - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38'
-- 
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