.gitlab-ci.yml 291 Bytes
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before_script:
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  - module add  python/3.6.1-2-anaconda
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  - pip install --user pytest-pythonpath
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  - module load nextflow/0.24.1-SNAPSHOT
  - ln -s /project/shared/bicf_workflow_ref/workflow_testdata/chipseq/*fastq.gz test_data/
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test:
  script:
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  - nextflow run workflow/main.nf 
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  - pytest