v1.3.1
User Facing
- Change Cellranger Version to 3.1.0
- Fix countDesign to take multiple samples
- Add MIT License
- Check Design File for spaces in name and file contents
- Update design example, README, and astrocyte.yml with current barcode IDs
Background
- Add CI artifacts
- Add Nextflow Tower integration into CI (GHH's profile)
Known Bugs
- cellranger mkfastq will not accept spaces in path for run param even if quoted, issue raised on 10XGenomics/cellranger github issue #31
- note: 10x doesn't check github issues, emailed instead
- note: pipeline checks for spaces and exits prematurely if found
- If multiple flowcells (tar'd) files are inputted then there will be multiple fastq's by the same name, currently dealing with that name conflict is not tractable
- note: if multiple bcl files are detected then cellranger_count design file is not created