cellranger_mkfastq issueshttps://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_mkfastq/-/issues2020-11-03T12:04:45-06:00https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_mkfastq/-/issues/44Add ability to handle dual index2020-11-03T12:04:45-06:00Gervaise Henrygervaise.henry@utsouthwestern.eduAdd ability to handle dual indexPendinghttps://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_mkfastq/-/issues/43Add output comments for untarBCL2020-11-03T12:04:45-06:00Gervaise Henrygervaise.henry@utsouthwestern.eduAdd output comments for untarBCLuntarBCL.sh takes FOREVER\
there are 2x `tar -t` before the actual untar\
those `tar -t` take a long time with no stdout updates
need to add echo's for stdout updatesuntarBCL.sh takes FOREVER\
there are 2x `tar -t` before the actual untar\
those `tar -t` take a long time with no stdout updates
need to add echo's for stdout updatesPendinghttps://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_mkfastq/-/issues/40Update multiqc version/references report2020-11-03T12:04:45-06:00Gervaise Henrygervaise.henry@utsouthwestern.eduUpdate multiqc version/references report* Add pipeline zenodo references report
* Add astrocyte version to version report (if param.astrocyte=true)
* Add astrocyte reference to reference report (if param.astrocyte=true)* Add pipeline zenodo references report
* Add astrocyte version to version report (if param.astrocyte=true)
* Add astrocyte reference to reference report (if param.astrocyte=true)Pending