Commits · 7dc9041e14f1e70b5743eb69f5695a5c0fd5f08b · BICF / Astrocyte / cellranger_mkfastq

17 Jul, 2020 2 commits
- Remove modules · 7dc9041e
  Gervaise Henry authored Jul 17, 2020
  
  7dc9041e
- recontaineraize · 60166999
  Gervaise Henry authored Jul 17, 2020
  
  60166999
21 Jun, 2020 3 commits
- Fix local process ulimit set · 4a6e4222
  Gervaise Henry authored Jun 21, 2020
  
  4a6e4222
- Version 2.1.4 · d770f29d
  Gervaise Henry authored Jun 21, 2020
  
  d770f29d
- Revert "Use base mask I1 = 8n, version 2.1.3" · 9f942c94
  Gervaise Henry authored Jun 21, 2020
```
This reverts commit 35c57522
```
  9f942c94
20 Jun, 2020 25 commits
- Update main.nf with version 2.1.3 · 6a4c2aff
  Gervaise Henry authored Jun 20, 2020
  
  6a4c2aff
- Use base mask I1 = 8n, version 2.1.3 · 35c57522
  Gervaise Henry authored Jun 20, 2020
  
  35c57522
- Fix params.dev · e396f80f
  Gervaise Henry authored Jun 20, 2020
  
  e396f80f
- Fix params.dev · 5dc602b6
  Gervaise Henry authored Jun 20, 2020
  
  5dc602b6
- Add dev tracking param, version 2.1.2 · 83373355
  Gervaise Henry authored Jun 20, 2020
  
  83373355
- mkfastq run on high power node, version 2.1.1 · 6b7f1c7f
  Gervaise Henry authored Jun 20, 2020
  
  6b7f1c7f
- Set version to 2.1.0 · 6f038019
  Gervaise Henry authored Jun 20, 2020
  
  6f038019
- Remove export location settings which causes an error in biohpc · 8d8b4556
  Gervaise Henry authored Jun 20, 2020
  
  8d8b4556
- Remove containers and add modules · 0bdf504a
  Gervaise Henry authored Jun 20, 2020
  
  0bdf504a
- Fix more comments · 6d03f843
  Gervaise Henry authored Jun 20, 2020
  
  6d03f843
- Add astrocyte param · 3d0c193f
  Gervaise Henry authored Jun 20, 2020
  
  3d0c193f
- Fix more comments · 709fc1a2
  Gervaise Henry authored Jun 20, 2020
  
  709fc1a2
- Fix more comments · 75718372
  Gervaise Henry authored Jun 20, 2020
  
  75718372
- Fix pipelineVersion var passing · 90113900
  Gervaise Henry authored Jun 20, 2020
  
  90113900
- Fix comment for pigzScript · d97d4daa
  Gervaise Henry authored Jun 20, 2020
  
  d97d4daa
- Add pipeline tracking · d84a6300
  Gervaise Henry authored Jun 20, 2020
  
  d84a6300
- Remove pigz version · 6991a125
  Gervaise Henry authored Jun 20, 2020
  
  6991a125
- Add nextflow version and manual pipeline version to multiqc output · 25c7c97e
  Gervaise Henry authored Jun 20, 2020
  
  25c7c97e
- Add mask as a param (non-Astrocyte) · 661cb8de
  Gervaise Henry authored Jun 20, 2020
  
  661cb8de
- Remove base mask · 6d14bd6c
  Gervaise Henry authored Jun 20, 2020
  
  6d14bd6c
- Move ignore dual index before mask and remove i2 from mask · a900c229
  Gervaise Henry authored Jun 20, 2020
  
  a900c229
- 40-set.ulimit-u.for.256v1.node.thread.error · ea67847f
  Gervaise Henry authored Jun 20, 2020
  
  ea67847f
- 39-use.base.mask · 1faeefff
  Gervaise Henry authored Jun 20, 2020
  
  1faeefff
- 38-ignore.dual.index · 6e066038
  Gervaise Henry authored Jun 20, 2020
  
  6e066038
- Fix multiqc config location · 5907a115
  Gervaise Henry authored Jun 20, 2020
  
  5907a115
06 Jan, 2020 4 commits
- Remove the last of the incompatible version calls · 7bdf8fba
  Gervaise Henry authored Jan 06, 2020
  
  7bdf8fba
- Update main.nf · 9d802817
  Gervaise Henry authored Jan 06, 2020
  
  9d802817
- Remove nextflow workflow version variables · 96fb6c87
  Gervaise Henry authored Jan 06, 2020
```
To be compatible with nextflow 0.31.0
```
  96fb6c87
- Change path input to file for nextflow 0.31.0 · 13b8fc75
  Gervaise Henry authored Jan 06, 2020
  
  13b8fc75
31 Dec, 2019 2 commits
- Try to get aws to copy bcl.tar.gz properly into untar process with path instead of file · 2b371110
  Gervaise Henry authored Dec 31, 2019
  
  2b371110
- Squash many small commits to get working · 428d3688
  Gervaise Henry authored Dec 28, 2019
  
  428d3688
28 Dec, 2019 1 commit
- Set scripts as inputs · 458eec97
  Gervaise Henry authored Dec 28, 2019
  
  458eec97
27 Dec, 2019 3 commits
- Remove cellranger ran fastqc output · 4ee9a681
  Gervaise Henry authored Dec 27, 2019
  
  4ee9a681
- Update mkfastq outputs · 2427f43a
  Gervaise Henry authored Dec 27, 2019
  
  2427f43a
- Remove SLURM options from mkfastq process · 6564fa23
  Gervaise Henry authored Dec 27, 2019
  
  6564fa23