Commits · 6991a125f02112761afa7012653f6e21eaef5d32 · BICF / Astrocyte / cellranger_mkfastq

20 Jun, 2020 16 commits
- Remove pigz version · 6991a125
  Gervaise Henry authored Jun 20, 2020
  
  6991a125
- Remove quote from config · fd0dc2a9
  Gervaise Henry authored Jun 20, 2020
  
  fd0dc2a9
- Add back pipeline and nextflow version to version collection · 038271af
  Gervaise Henry authored Jun 20, 2020
  
  038271af
- Update changelog · 4506e711
  Gervaise Henry authored Jun 20, 2020
  
  4506e711
- Add nextflow version and manual pipeline version to multiqc output · 25c7c97e
  Gervaise Henry authored Jun 20, 2020
  
  25c7c97e
- Add mask as a param (non-Astrocyte) · 661cb8de
  Gervaise Henry authored Jun 20, 2020
  
  661cb8de
- Remove base mask · 6d14bd6c
  Gervaise Henry authored Jun 20, 2020
  
  6d14bd6c
- Move ignore dual index before mask and remove i2 from mask · a900c229
  Gervaise Henry authored Jun 20, 2020
  
  a900c229
- 40-set.ulimit-u.for.256v1.node.thread.error · ea67847f
  Gervaise Henry authored Jun 20, 2020
  
  ea67847f
- No CI retrys · fa4b88e3
  Gervaise Henry authored Jun 20, 2020
  
  fa4b88e3
- 39-use.base.mask · 1faeefff
  Gervaise Henry authored Jun 20, 2020
  
  1faeefff
- 38-ignore.dual.index · 6e066038
  Gervaise Henry authored Jun 20, 2020
  
  6e066038
- Fix multiqc config location · 5907a115
  Gervaise Henry authored Jun 20, 2020
  
  5907a115
- Fix configs · 21bde8f6
  Gervaise Henry authored Jun 20, 2020
  
  21bde8f6
- Fix CI:astrocyte to match new runner settings · 1d6fd7f0
  Gervaise Henry authored Jun 20, 2020
  
  1d6fd7f0
- Merge branch 'master' into 'develop' · 2fe99258
  Gervaise Henry authored Jun 20, 2020
```
Master

See merge request !60
```
  2fe99258
06 Jan, 2020 14 commits
- Move config into root dir · b652f9a5
  Gervaise Henry authored Jan 06, 2020
  
  b652f9a5
- Try putting nextflow.config into config/ · f8b66390
  Gervaise Henry authored Jan 06, 2020
  
  f8b66390
- Remove the last of the incompatible version calls · 7bdf8fba
  Gervaise Henry authored Jan 06, 2020
  
  7bdf8fba
- Update main.nf · 9d802817
  Gervaise Henry authored Jan 06, 2020
  
  9d802817
- Remove fully pipeline and nextflow versions · 5e0d5900
  Gervaise Henry authored Jan 06, 2020
  
  5e0d5900
- Remove nextflow workflow version variables · 96fb6c87
  Gervaise Henry authored Jan 06, 2020
```
To be compatible with nextflow 0.31.0
```
  96fb6c87
- Change path input to file for nextflow 0.31.0 · 13b8fc75
  Gervaise Henry authored Jan 06, 2020
  
  13b8fc75
- Try have astrocyte load nextflow 19.09.0 module · 11b119d2
  Gervaise Henry authored Jan 06, 2020
  
  11b119d2
- Update astrocyte yml to load singularity · bbe6e84e
  Gervaise Henry authored Jan 06, 2020
  
  bbe6e84e
- Merge branch 'develop' into 'master' · e978df9d
  Gervaise Henry authored Jan 06, 2020
```
Develop

See merge request !59
```
  e978df9d
- Remove indev from version · 4dd84b9c
  Gervaise Henry authored Jan 06, 2020
  
  4dd84b9c
- Update CHANGELOG.md · addba41f
  Gervaise Henry authored Jan 06, 2020
  
  addba41f
- Change pipeline version from 1.4.0_indev to 2.0.0_indev · 0d0a93a0
  Gervaise Henry authored Jan 06, 2020
  
  0d0a93a0
- Update templates · cf24e3cd
  Gervaise Henry authored Jan 06, 2020
  
  cf24e3cd
01 Jan, 2020 1 commit
- Add note to readme about awscli configure · 04c2cc2c
  Gervaise Henry authored Jan 01, 2020
  
  04c2cc2c
31 Dec, 2019 9 commits
- Remove unpopulated process in biohpc_local.config · 7523063a
  Gervaise Henry authored Dec 31, 2019
  
  7523063a
- Remove unpopulated process in biohpc_local.config · 7d25a3b8
  Gervaise Henry authored Dec 31, 2019
  
  7d25a3b8
- Add known bug for aws · ff70f39f
  Gervaise Henry authored Dec 31, 2019
  
  ff70f39f
- Update aws resources to based on BioHPC cluster resource usage · e8dafa71
  Gervaise Henry authored Dec 31, 2019
  
  e8dafa71
- Try to get aws to copy bcl.tar.gz properly into untar process with path instead of file · 2b371110
  Gervaise Henry authored Dec 31, 2019
  
  2b371110
- Merge branch '39-aws' into 'develop' · 942677d9
  Gervaise Henry authored Dec 31, 2019
```
39 aws

See merge request !57
```
  942677d9
- Fix simple2 ci · d1f74a99
  Gervaise Henry authored Dec 31, 2019
  
  d1f74a99
- Fix CI to use standard config (biohpc with cluster) · ba85c18a
  Gervaise Henry authored Dec 31, 2019
  
  ba85c18a
- Make ready for merge · fe8fef7f
  Gervaise Henry authored Dec 31, 2019
  
  fe8fef7f