From da54554ddb43e23eefe2e9dcdce5dbe7ce52f4c3 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 27 Dec 2019 01:09:40 -0600
Subject: [PATCH] Update biohpc.config
---
workflow/conf/biohpc.config | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/workflow/conf/biohpc.config b/workflow/conf/biohpc.config
index 5176b0b..46b8d20 100755
--- a/workflow/conf/biohpc.config
+++ b/workflow/conf/biohpc.config
@@ -2,13 +2,13 @@ process {
executor = 'slurm'
queue = 'super'
clusterOptions = '--hold'
+ container = 'docker://bicf/bicfbase:1.3'
withName:checkDesignFile {
container = 'docker://bicf/python3:1.2'
executor = 'local'
}
withName:untarBCL {
- container = 'docker://bicf/bicfbase:1.3'
queue = 'super'
}
withName:mkfastq {
@@ -16,7 +16,6 @@ process {
queue = '128GB,256GB,256GBv1,384GB'
}
withName:countDesign {
- container = 'docker://bicf/bicfbase:1.3'
executor = 'local'
}
withName:fastqc {
--
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