From cca1abd1b5df81b4bccc8eda11fe8e542d934686 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Mon, 18 Jun 2018 14:27:28 -0500
Subject: [PATCH] Fix module loading issue.
---
workflow/main.nf | 3 +++
1 file changed, 3 insertions(+)
diff --git a/workflow/main.nf b/workflow/main.nf
index b087548..f2d75a9 100755
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -30,6 +30,7 @@ process checkDesignFile {
script:
"""
+ module load python/3.6.1-2-anaconda
python3 $baseDir/scripts/check_design.py -d $params.designFile
"""
}
@@ -74,6 +75,8 @@ process mkfastq {
script:
"""
+ module load cellranger/2.1.1
+ module load bcl2fastq/2.17.1.14
cellranger mkfastq --id="${bcl.baseName}" --run=$bcl --csv=$designPaths
"""
}
--
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