diff --git a/CHANGELOG.md b/CHANGELOG.md index 77cd19ea3e5ef7935ff018cbd75dd0292d804c34..39d6d150c0d8eb181cc81f3690cf7e75e595b3b2 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,4 +1,4 @@ -# v2.1.4 +# v2.1.5 **UserFacing** * Check Design File for spaces in name and file contents * Update design example, README, and astrocyte.yml with current barcode IDs diff --git a/workflow/main.nf b/workflow/main.nf index 9eeddc12f603878c0e929f523d841181a50d6d45..b606358b7e5599bbe9c1cb8ee68e38c9d0334676 100755 --- a/workflow/main.nf +++ b/workflow/main.nf @@ -32,7 +32,7 @@ bclCount = Channel .count() // Define regular variables -pipelineVersion = "2.1.4" +pipelineVersion = "2.1.5" name = params.name designLocation = Channel .fromPath(params.designFile) @@ -105,7 +105,6 @@ process checkDesignFile { script: """ hostname - ulimit -u 16384 ulimit -a noSpaceDesign=\$(echo "${designLocation}" | tr -d ' ') if [[ "\${noSpaceDesign}" != "${designLocation}" ]]; then @@ -203,7 +202,6 @@ if (bclCount.value == 1) { script: """ hostname - ulimit -u 16384 ulimit -a bash countDesign.sh """ @@ -264,7 +262,6 @@ process versions { script: """ hostname - ulimit -u 16384 ulimit -a python3 generate_versions.py -f version_*.txt -o versions python3 generate_references.py -r ${references} -o references @@ -291,7 +288,6 @@ process multiqc { script: """ hostname - ulimit -u 16384 ulimit -a #export LC_ALL=C.UTF-8 #export LANG=C.UTF-8 diff --git a/workflow/nextflow.config b/workflow/nextflow.config index 9c3115486abe51ce8cbedc5681141ab2aebb6541..0e69806b193bf182f033e86b46abdb563c792c8e 100644 --- a/workflow/nextflow.config +++ b/workflow/nextflow.config @@ -47,6 +47,6 @@ manifest { homePage = 'https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_mkfastq' description = 'This pipeline is a wrapper for the cellranger mkfastq tool from 10x Genomics (which uses Illuminas bcl2fastq). It takes bcls and demultiplexes samples from 10x Genomics Single Cell Gene Expression libraries into fastqs.' mainScript = 'main.nf' - version = '2.1.4' + version = '2.1.5' nextflowVersion = '>=0.31.0' }