From 9b8bab0c7c8d5ad78836182a1b22b6943affc411 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 27 Dec 2019 00:51:12 -0600
Subject: [PATCH] Update biohpc.config
---
workflow/conf/biohpc.config | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/workflow/conf/biohpc.config b/workflow/conf/biohpc.config
index 46b8d20..5176b0b 100755
--- a/workflow/conf/biohpc.config
+++ b/workflow/conf/biohpc.config
@@ -2,13 +2,13 @@ process {
executor = 'slurm'
queue = 'super'
clusterOptions = '--hold'
- container = 'docker://bicf/bicfbase:1.3'
withName:checkDesignFile {
container = 'docker://bicf/python3:1.2'
executor = 'local'
}
withName:untarBCL {
+ container = 'docker://bicf/bicfbase:1.3'
queue = 'super'
}
withName:mkfastq {
@@ -16,6 +16,7 @@ process {
queue = '128GB,256GB,256GBv1,384GB'
}
withName:countDesign {
+ container = 'docker://bicf/bicfbase:1.3'
executor = 'local'
}
withName:fastqc {
--
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