Commit 96fb6c87 authored by Gervaise Henry's avatar Gervaise Henry 🤠
Browse files

Remove nextflow workflow version variables

To be compatible with nextflow 0.31.0
parent 13b8fc75
Pipeline #5546 failed with stages
in 23 seconds
......@@ -10,8 +10,8 @@ main.nf
// Define input variables
params.name = "run"
params.bcl = "${baseDir}/../test_data/*.tar.gz"
params.designFile = "${baseDir}/../test_data/design.csv"
params.bcl = "${baseDir}/../test_data/simple1/*.tar.gz"
params.designFile = "${baseDir}/../test_data/single1/cellranger-tiny-bcl-simple-1_2_0.csv"
params.outDir = "${baseDir}/output"
// Define list of files
......@@ -71,8 +71,8 @@ process checkDesignFile {
mv "${designLocation}" "\${noSpaceDesign}"
fi
python3 check_design.py -d \${noSpaceDesign}
echo "${workflow.manifest.version}" > version_pipeline.txt
echo "${workflow.nextflow.version}"> version_nextflow.txt
#echo "${workflow.manifest.version}" > version_pipeline.txt
#echo "${workflow.nextflow.version}"> version_nextflow.txt
bash versions_python.sh > version_python.txt
"""
......
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