From 852500e66b8027bd94e51d05c16b92b699a86e4b Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 9 Apr 2019 21:43:50 -0500
Subject: [PATCH] Add process tags
---
workflow/main.nf | 15 +++++++--------
1 file changed, 7 insertions(+), 8 deletions(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index cb628ae..2464f18 100755
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -20,8 +20,8 @@ outDir = params.outDir
references = params.references
process checkDesignFile {
-
- publishDir "$outDir/${task.process}", mode: 'copy'
+ tag "${bcl.baseName}"
+ publishDir "$outDir/misc/${task.process}/${bcl.baseName}", mode: 'copy'
input:
@@ -44,7 +44,6 @@ process checkDesignFile {
process untarBCL {
tag "$tar"
-
publishDir "$outDir/${task.process}", mode: 'copy'
input:
@@ -72,7 +71,6 @@ process untarBCL {
process mkfastq {
tag "${bcl.baseName}"
queue '128GB,256GB,256GBv1,384GB'
-
publishDir "$outDir/${task.process}", mode: 'copy'
input:
@@ -101,9 +99,9 @@ process mkfastq {
process fastqc {
+ tag "${bcl.baseName}"
queue 'super'
-
- publishDir "$outDir/${task.process}", mode: 'copy'
+ publishDir "$outDir/misc/${task.process}/${bcl.baseName}", mode: 'copy'
input:
file fastqPaths
@@ -126,7 +124,8 @@ process fastqc {
process versions {
- publishDir "$outDir/${task.process}", mode: 'copy'
+ tag "${bcl.baseName}"
+ publishDir "$outDir/misc/${task.process}/${bcl.baseName}", mode: 'copy'
input:
@@ -150,8 +149,8 @@ process versions {
process multiqc {
+ tag "${bcl.baseName}"
queue 'super'
-
publishDir "$outDir/${task.process}", mode: 'copy'
input:
--
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