Commit 7dc9041e authored by Gervaise Henry's avatar Gervaise Henry 🤠
Browse files

Remove modules

parent 361c5e01
Pipeline #7603 passed with stages
in 8 minutes and 9 seconds
...@@ -89,7 +89,6 @@ process trackStart { ...@@ -89,7 +89,6 @@ process trackStart {
process checkDesignFile { process checkDesignFile {
tag "${name}" tag "${name}"
module 'python/3.6.1-2-anaconda'
input: input:
file check_designScript file check_designScript
...@@ -125,7 +124,6 @@ process checkDesignFile { ...@@ -125,7 +124,6 @@ process checkDesignFile {
process untarBCL { process untarBCL {
tag "${tar.simpleName}" tag "${tar.simpleName}"
module 'pigz/2.4'
input: input:
file untarBCLScript file untarBCLScript
...@@ -153,7 +151,6 @@ process mkfastq { ...@@ -153,7 +151,6 @@ process mkfastq {
tag "${bcl.simpleName}" tag "${bcl.simpleName}"
publishDir "${outDir}/${task.process}", mode: 'copy', pattern: "{*/outs/**/*.fastq.gz}" publishDir "${outDir}/${task.process}", mode: 'copy', pattern: "{*/outs/**/*.fastq.gz}"
queue '128GB,256GB,256GBv1,384GB' queue '128GB,256GB,256GBv1,384GB'
module 'cellranger/3.1.0:bcl2fastq/2.19.1'
input: input:
file versions_cellrangerScript file versions_cellrangerScript
...@@ -215,7 +212,6 @@ if (bclCount.value == 1) { ...@@ -215,7 +212,6 @@ if (bclCount.value == 1) {
process fastqc { process fastqc {
tag "${bcl}" tag "${bcl}"
module 'fastqc/0.11.5:parallel'
input: input:
file fastqcScript file fastqcScript
...@@ -243,7 +239,6 @@ process fastqc { ...@@ -243,7 +239,6 @@ process fastqc {
process versions { process versions {
tag "${name}" tag "${name}"
module 'python/3.6.1-2-anaconda:cellranger/3.1.0:bcl2fastq/2.19.1:fastqc/0.11.5:pandoc/2.7'
input: input:
file versionsScript file versionsScript
...@@ -275,7 +270,6 @@ process multiqc { ...@@ -275,7 +270,6 @@ process multiqc {
tag "${name}" tag "${name}"
publishDir "${outDir}/${task.process}/${name}", mode: 'copy', pattern: "{multiqc*}" publishDir "${outDir}/${task.process}/${name}", mode: 'copy', pattern: "{multiqc*}"
module 'multiqc/1.7'
input: input:
file multiqcConf file multiqcConf
......
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