Remove modules

workflow/main.nf

@@ -89,7 +89,6 @@ process trackStart {
 process checkDesignFile {
 
   tag "${name}"
-  module 'python/3.6.1-2-anaconda'
 
   input:
     file check_designScript
@@ -125,7 +124,6 @@ process checkDesignFile {
 process untarBCL {  
 
   tag "${tar.simpleName}"
-  module 'pigz/2.4'
 
   input:
     file untarBCLScript
@@ -153,7 +151,6 @@ process mkfastq {
   tag "${bcl.simpleName}"
   publishDir "${outDir}/${task.process}", mode: 'copy', pattern: "{*/outs/**/*.fastq.gz}"
   queue '128GB,256GB,256GBv1,384GB'
-  module 'cellranger/3.1.0:bcl2fastq/2.19.1'
 
   input:
     file versions_cellrangerScript
@@ -215,7 +212,6 @@ if (bclCount.value == 1) {
 process fastqc {
 
   tag "${bcl}"
-  module 'fastqc/0.11.5:parallel'
 
   input:
     file fastqcScript    
@@ -243,7 +239,6 @@ process fastqc {
 process versions {
 
   tag "${name}"
-  module 'python/3.6.1-2-anaconda:cellranger/3.1.0:bcl2fastq/2.19.1:fastqc/0.11.5:pandoc/2.7'
 
   input:
   file versionsScript
@@ -275,7 +270,6 @@ process multiqc {
 
   tag "${name}"
   publishDir "${outDir}/${task.process}/${name}", mode: 'copy', pattern: "{multiqc*}"
-  module 'multiqc/1.7'
 
   input:
     file multiqcConf