Remove modules

7dc9041e · Gervaise Henry · 361c5e01 · 7dc9041e
Commit 7dc9041e authored Jul 17, 2020 by Gervaise Henry 🤠
Hide whitespace changes
Inline Side-by-side

Showing with 0 additions and 6 deletions

workflow/main.nf workflow/main.nf +0 -6

No files found.
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -89,7 +89,6 @@ process trackStart {
 process checkDesignFile {

  tag "${name}"
-  module 'python/3.6.1-2-anaconda'

  input:
    file check_designScript
@@ -125,7 +124,6 @@ process checkDesignFile {
 process untarBCL {  

  tag "${tar.simpleName}"
-  module 'pigz/2.4'

  input:
    file untarBCLScript
@@ -153,7 +151,6 @@ process mkfastq {
  tag "${bcl.simpleName}"
  publishDir "${outDir}/${task.process}", mode: 'copy', pattern: "{*/outs/**/*.fastq.gz}"
  queue '128GB,256GB,256GBv1,384GB'
-  module 'cellranger/3.1.0:bcl2fastq/2.19.1'

  input:
    file versions_cellrangerScript
@@ -215,7 +212,6 @@ if (bclCount.value == 1) {
 process fastqc {

  tag "${bcl}"
-  module 'fastqc/0.11.5:parallel'

  input:
    file fastqcScript    
@@ -243,7 +239,6 @@ process fastqc {
 process versions {

  tag "${name}"
-  module 'python/3.6.1-2-anaconda:cellranger/3.1.0:bcl2fastq/2.19.1:fastqc/0.11.5:pandoc/2.7'

  input:
  file versionsScript
@@ -275,7 +270,6 @@ process multiqc {

  tag "${name}"
  publishDir "${outDir}/${task.process}/${name}", mode: 'copy', pattern: "{multiqc*}"
-  module 'multiqc/1.7'

  input:
    file multiqcConf