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BICF
Astrocyte
cellranger_mkfastq
Commits
6d14bd6c
Commit
6d14bd6c
authored
Jun 20, 2020
by
Gervaise Henry
🤠
Browse files
Remove base mask
parent
a900c229
Changes
1
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Inline
Side-by-side
workflow/main.nf
View file @
6d14bd6c
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@@ -130,7 +130,7 @@ process mkfastq {
hostname
ulimit -u 16384
ulimit -a
cellranger mkfastq --id=mkfastq_${bcl.simpleName} --run=${bcl} --csv=${design} --ignore-dual-index
--use-bases-mask=Y28n*,I8n*,Y*
cellranger mkfastq --id=mkfastq_${bcl.simpleName} --run=${bcl} --csv=${design} --ignore-dual-index
mkdir fq
mkdir "fq/${bcl.simpleName}"
find . -name "*.fastq.gz" -exec cp {} fq/${bcl.simpleName}/ \\;
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