diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 9014edbce335ec400edda9e5d55aa2f1d15600d8..63c6f0076754a40ab286ca6334216ed4f59ec3f9 100755 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -4,8 +4,8 @@ before_script: - module load nextflow/0.31.1_Ignite - mkdir -p test_data/simple1 - mkdir -p test_data/simple2 - - ln -s /project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_mkfastq/simple1/* test_data/simple1/ - - ln -s /project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_mkfastq/simple2/* test_data/simple2/ + - ln -sfn /project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_mkfastq/simple1/* test_data/simple1/ + - ln -sfn /project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_mkfastq/simple2/* test_data/simple2/ stages: - astrocyte