Commit 6343f584 authored by Gervaise Henry's avatar Gervaise Henry 🤠
Browse files

Revert

parent 8d3bb432
Pipeline #8256 passed with stages
in 5 minutes and 54 seconds
...@@ -188,7 +188,7 @@ process mkfastq { ...@@ -188,7 +188,7 @@ process mkfastq {
hostname hostname
ulimit -u 16384 ulimit -u 16384
ulimit -a ulimit -a
cellranger mkfastq --id=mkfastq_${bcl.simpleName} --run=${bcl} --csv=${design} --ignore-dual-index ${mask} cellranger mkfastq --id=mkfastq_${bcl.simpleName} --run=${bcl} --csv=${design} ${mask}
mkdir fq mkdir fq
mkdir "fq/${bcl.simpleName}" mkdir "fq/${bcl.simpleName}"
find . -name "*.fastq.gz" -exec cp {} fq/${bcl.simpleName}/ \\; find . -name "*.fastq.gz" -exec cp {} fq/${bcl.simpleName}/ \\;
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