Commit 6343f584 authored by Gervaise Henry's avatar Gervaise Henry 🤠
Browse files


parent 8d3bb432
Pipeline #8256 passed with stages
in 5 minutes and 54 seconds
......@@ -188,7 +188,7 @@ process mkfastq {
ulimit -u 16384
ulimit -a
cellranger mkfastq --id=mkfastq_${bcl.simpleName} --run=${bcl} --csv=${design} --ignore-dual-index ${mask}
cellranger mkfastq --id=mkfastq_${bcl.simpleName} --run=${bcl} --csv=${design} ${mask}
mkdir fq
mkdir "fq/${bcl.simpleName}"
find . -name "*.fastq.gz" -exec cp {} fq/${bcl.simpleName}/ \\;
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment