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cellranger_mkfastq
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BICF
Astrocyte
cellranger_mkfastq
Commits
6343f584
Commit
6343f584
authored
Oct 30, 2020
by
Gervaise Henry
🤠
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8d3bb432
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#8256
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workflow/main.nf
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6343f584
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@@ -188,7 +188,7 @@ process mkfastq {
hostname
ulimit -u 16384
ulimit -a
cellranger mkfastq --id=mkfastq_${bcl.simpleName} --run=${bcl} --csv=${design}
--ignore-dual-index
${mask}
cellranger mkfastq --id=mkfastq_${bcl.simpleName} --run=${bcl} --csv=${design} ${mask}
mkdir fq
mkdir "fq/${bcl.simpleName}"
find . -name "*.fastq.gz" -exec cp {} fq/${bcl.simpleName}/ \\;
...
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