Commit 5907a115 authored by Gervaise Henry's avatar Gervaise Henry 🤠
Browse files

Fix multiqc config location

parent 21bde8f6
Pipeline #7318 passed with stages
in 9 minutes and 34 seconds
...@@ -42,7 +42,7 @@ versions_bcl2fastqScript = Channel.fromPath("$baseDir/scripts/versions_bcl2fastq ...@@ -42,7 +42,7 @@ versions_bcl2fastqScript = Channel.fromPath("$baseDir/scripts/versions_bcl2fastq
versions_fastqcScript = Channel.fromPath("$baseDir/scripts/versions_fastqc.sh") versions_fastqcScript = Channel.fromPath("$baseDir/scripts/versions_fastqc.sh")
// Define report files // Define report files
multiqcConf = Channel.fromPath("${baseDir}/conf/multiqc_config.yaml") multiqcConf = Channel.fromPath("${baseDir}/configs/multiqc_config.yaml")
references = Channel.fromPath("${baseDir}/../docs/references.md") references = Channel.fromPath("${baseDir}/../docs/references.md")
...@@ -242,4 +242,4 @@ process multiqc { ...@@ -242,4 +242,4 @@ process multiqc {
multiqc -c ${multiqcConf} . multiqc -c ${multiqcConf} .
""" """
} }
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