Commit 54fc41b2 authored by Jeremy Mathews's avatar Jeremy Mathews
Browse files

Update configs

parent 7bb5c7ab
Pipeline #8283 failed with stages
in 12 seconds
...@@ -16,7 +16,11 @@ process { ...@@ -16,7 +16,11 @@ process {
withName:checkDesignFile { withName:checkDesignFile {
cpus = 4 cpus = 4
} }
withName:mkfastq { withName:cellranger_mkfastq {
cpus = 6
memory = '2 GB'
}
withName:spaceranger_mkfastq {
cpus = 6 cpus = 6
memory = '2 GB' memory = '2 GB'
} }
......
...@@ -12,11 +12,11 @@ process { ...@@ -12,11 +12,11 @@ process {
withName:untarBCL { withName:untarBCL {
queue = 'super' queue = 'super'
} }
withName:mkfastq { withName:cellranger_mkfastq {
queue = '128GB,256GB,256GBv1,384GB' queue = '128GB,256GB,256GBv1,384GB'
} }
withName:countDesign { withName:spaceranger_mkfastq {
executor = 'local' queue = '128GB,256GB,256GBv1,384GB'
} }
withName:fastqc { withName:fastqc {
queue = 'super' queue = 'super'
......
...@@ -5,12 +5,12 @@ custom_logo_title: 'Bioinformatics Core Facility' ...@@ -5,12 +5,12 @@ custom_logo_title: 'Bioinformatics Core Facility'
report_header_info: report_header_info:
- Contact E-mail: 'bicf@utsouthwestern.edu' - Contact E-mail: 'bicf@utsouthwestern.edu'
- Application Type: 'cellranger_mkfastq' - Application Type: '10x-ranger_mkfastq'
- Department: 'Bioinformatic Core Facility, Department of Bioinformatics' - Department: 'Bioinformatic Core Facility, Department of Bioinformatics'
# Title to use for the report. # Title to use for the report.
title: BICF CellRanger MKfastq Analysis Report title: BICF 10x-Ranger MKfastq Analysis Report
report_comment: > report_comment: >
This report has been generated by the <a href="https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_mkfastq" This report has been generated by the <a href="https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_mkfastq"
......
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