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cellranger_mkfastq
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BICF
Astrocyte
cellranger_mkfastq
Commits
54fc41b2
Commit
54fc41b2
authored
Nov 03, 2020
by
Jeremy Mathews
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Update configs
parent
7bb5c7ab
Pipeline
#8283
failed with stages
in 12 seconds
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3
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1
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3 changed files
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10 additions
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6 deletions
+10
-6
workflow/configs/aws.config
workflow/configs/aws.config
+5
-1
workflow/configs/cluster.config
workflow/configs/cluster.config
+3
-3
workflow/configs/multiqc_config.yaml
workflow/configs/multiqc_config.yaml
+2
-2
No files found.
workflow/configs/aws.config
View file @
54fc41b2
...
...
@@ -16,7 +16,11 @@ process {
withName
:
checkDesignFile
{
cpus
=
4
}
withName
:
mkfastq
{
withName
:
cellranger_mkfastq
{
cpus
=
6
memory
=
'2 GB'
}
withName
:
spaceranger_mkfastq
{
cpus
=
6
memory
=
'2 GB'
}
...
...
workflow/configs/cluster.config
View file @
54fc41b2
...
...
@@ -12,11 +12,11 @@ process {
withName
:
untarBCL
{
queue
=
'super'
}
withName
:
mkfastq
{
withName
:
cellranger_
mkfastq
{
queue
=
'128GB,256GB,256GBv1,384GB'
}
withName
:
countDesign
{
executor
=
'local
'
withName
:
spaceranger_mkfastq
{
queue
=
'128GB,256GB,256GBv1,384GB
'
}
withName
:
fastqc
{
queue
=
'super'
...
...
workflow/configs/multiqc_config.yaml
View file @
54fc41b2
...
...
@@ -5,12 +5,12 @@ custom_logo_title: 'Bioinformatics Core Facility'
report_header_info
:
-
Contact E-mail
:
'
bicf@utsouthwestern.edu'
-
Application Type
:
'
cell
ranger_mkfastq'
-
Application Type
:
'
10x-
ranger_mkfastq'
-
Department
:
'
Bioinformatic
Core
Facility,
Department
of
Bioinformatics'
# Title to use for the report.
title
:
BICF
Cell
Ranger MKfastq Analysis Report
title
:
BICF
10x-
Ranger MKfastq Analysis Report
report_comment
:
>
This report has been generated by the <a href="https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_mkfastq"
...
...
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