From 4ee9a6818a47d4a7ec88de32c74deabc7bbe79e7 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 27 Dec 2019 22:45:57 -0600
Subject: [PATCH] Remove cellranger ran fastqc output
---
workflow/main.nf | 1 -
1 file changed, 1 deletion(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index bf58849..f9ae940 100755
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -91,7 +91,6 @@ process mkfastq {
file("**/outs/**/*.fastq.gz") into fastqPaths
file("**/outs/**/*.fastq.gz") into cellrangerCount
file("**/outs/fastq_path/Stats/*") into bqcPaths
- file("**/outs/fastq_path/Reports/*") into fqcPaths2
val "${bcl.baseName}" into bclName
script:
--
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