Add astrocyte param

astrocyte_pkg.yml

@@ -90,6 +90,15 @@ workflow_parameters:
     description: |
       A design file listing lane, sample, corresponding index (last characters represent well position of 96-well plate). [Current sample barcode IDs](https://s3-us-west-2.amazonaws.com/10x.files/supp/cell-exp/chromium-shared-sample-indexes-plate.csv)
 
+  - id: astrocyte
+    type: select
+    choices:
+      - [ 'true', 'true' ]
+    required: true
+    default: 'true'
+    description: |
+      Ensure configuraton for astrocyte.
+
 
 # -----------------------------------------------------------------------------
 # SHINY APP CONFIGURATION

workflow/main.nf

@@ -13,6 +13,7 @@ params.name = "run"
 params.bcl = "${baseDir}/../test_data/simple1/*.tar.gz"
 params.designFile = "${baseDir}/../test_data/single1/cellranger-tiny-bcl-simple-1_2_0.csv"
 params.mask = ""
+params.astrocyte = false
 params.outDir = "${baseDir}/output"
 
 // Define list of files