From 2427f43a0fc985eaa1d9e3a2d29ecebe6bbfcab2 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 27 Dec 2019 22:34:30 -0600
Subject: [PATCH] Update mkfastq outputs
---
workflow/main.nf | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index 4aaeb85..bf58849 100755
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -90,7 +90,8 @@ process mkfastq {
output:
file("**/outs/**/*.fastq.gz") into fastqPaths
file("**/outs/**/*.fastq.gz") into cellrangerCount
- file("**/outs/fastq_path/Stats/Stats.json") into bqcPaths
+ file("**/outs/fastq_path/Stats/*") into bqcPaths
+ file("**/outs/fastq_path/Reports/*") into fqcPaths2
val "${bcl.baseName}" into bclName
script:
--
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