Commit 13b8fc75 authored by Gervaise Henry's avatar Gervaise Henry 🤠
Browse files

Change path input to file for nextflow 0.31.0

parent 11b119d2
Pipeline #5545 passed with stages
in 8 minutes and 48 seconds
...@@ -40,7 +40,6 @@ documentation_files: ...@@ -40,7 +40,6 @@ documentation_files:
# Specify versioned module names to ensure reproducability. # Specify versioned module names to ensure reproducability.
workflow_modules: workflow_modules:
- 'singularity/3.0.2' - 'singularity/3.0.2'
- 'nextflow/19.09.0'
# A list of parameters used by the workflow, defining how to present them, # A list of parameters used by the workflow, defining how to present them,
# options etc in the web interface. For each parameter: # options etc in the web interface. For each parameter:
......
...@@ -86,7 +86,7 @@ process untarBCL { ...@@ -86,7 +86,7 @@ process untarBCL {
input: input:
file untarBCLScript file untarBCLScript
file versions_pigzScript file versions_pigzScript
each path(tar) from tarList each file(tar) from tarList
output: output:
file("*[!version_pigz.txt]") into bclPaths mode flatten file("*[!version_pigz.txt]") into bclPaths mode flatten
...@@ -111,7 +111,7 @@ process mkfastq { ...@@ -111,7 +111,7 @@ process mkfastq {
input: input:
file versions_cellrangerScript file versions_cellrangerScript
file versions_bcl2fastqScript file versions_bcl2fastqScript
each path(bcl) from bclPaths.collect() each file(bcl) from bclPaths.collect()
file design from designPaths file design from designPaths
output: output:
......
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