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BICF
Astrocyte
cellranger_mkfastq
Commits
13b8fc75
Commit
13b8fc75
authored
Jan 06, 2020
by
Gervaise Henry
🤠
Browse files
Change path input to file for nextflow 0.31.0
parent
11b119d2
Pipeline
#5545
passed with stages
in 8 minutes and 48 seconds
Changes
2
Pipelines
2
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astrocyte_pkg.yml
View file @
13b8fc75
...
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@@ -40,7 +40,6 @@ documentation_files:
# Specify versioned module names to ensure reproducability.
workflow_modules
:
-
'
singularity/3.0.2'
-
'
nextflow/19.09.0'
# A list of parameters used by the workflow, defining how to present them,
# options etc in the web interface. For each parameter:
...
...
workflow/main.nf
View file @
13b8fc75
...
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@@ -86,7 +86,7 @@ process untarBCL {
input:
file untarBCLScript
file versions_pigzScript
each
path
(tar) from tarList
each
file
(tar) from tarList
output:
file("*[!version_pigz.txt]") into bclPaths mode flatten
...
...
@@ -111,7 +111,7 @@ process mkfastq {
input:
file versions_cellrangerScript
file versions_bcl2fastqScript
each
path
(bcl) from bclPaths.collect()
each
file
(bcl) from bclPaths.collect()
file design from designPaths
output:
...
...
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