multiqc_config.yaml 1.33 KB
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# Custom Logo
custom_logo: 'bicf_logo.png'
custom_logo_url: 'https://www.utsouthwestern.edu/labs/bioinformatics/'
custom_logo_title: 'Bioinformatics Core Facility'

report_header_info:
    - Contact E-mail: 'bicf@utsouthwestern.edu'
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    - Application Type: '10x-ranger_mkfastq'
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    - Department: 'Bioinformatic Core Facility, Department of Bioinformatics'


# Title to use for the report.
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title: BICF 10x-Ranger MKfastq Analysis Report
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report_comment: >
  This report has been generated by the <a href="https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_mkfastq"
  target="_blank">BICF/cellranger_mkfastq</a> pipeline.

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module_order:
    - bcl2fastq
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    - fastqc:
        name: 'FastQC (I1)'
        info: 'This section of the report shows FastQC results for index 1.'
        target: ''
        path_filters:
            - '*_I1_*fastqc.zip'
    - fastqc:
        name: 'FastQC (R1)'
        info: 'This section of the report shows FastQC results for read 1.'
        target: ''
        path_filters:
            - '*_R1_*fastqc.zip'
    - fastqc:
        name: 'FastQC (R2)'
        info: 'This section of the report shows FastQC results for read 2.'
        target: ''
        path_filters:
            - '*_R2_*fastqc.zip'
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    - custom_content
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report_section_order:
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    software_versions:
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      order: -1100
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    software_references:
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      order: -1200