cluster.config 527 Bytes
Newer Older
Gervaise Henry's avatar
Gervaise Henry committed
1
2
3
4
5
6
7
8
9
10
11
12
13
14
process {
  executor = 'slurm'
  queue = 'super'
  clusterOptions = '--hold'

  withName:trackStart {
    executor = 'local'
  }
  withName:checkDesignFile {
    executor = 'local'
  }
  withName:untarBCL {
    queue = 'super'
  }
Jeremy Mathews's avatar
Jeremy Mathews committed
15
  withName:cellranger_mkfastq {
Gervaise Henry's avatar
Gervaise Henry committed
16
17
    queue = '128GB,256GB,256GBv1,384GB'
  }
Jeremy Mathews's avatar
Jeremy Mathews committed
18
19
  withName:spaceranger_mkfastq {
    queue = '128GB,256GB,256GBv1,384GB'
Gervaise Henry's avatar
Gervaise Henry committed
20
21
22
23
24
25
26
27
28
29
30
  }
  withName:fastqc {
    queue = 'super'
  }
  withName:versions {
    executor = 'local'
  }
  withName:multiqc {
    executor = 'local'
  }
}