aws.config 554 Bytes
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workDir = 's3://gudmap.rbk/work'
aws.client.storageEncryption = 'AES256'
aws {
  region = 'us-east-2'
  batch {
    cliPath = '/home/ec2-user/miniconda/bin/aws'
  }
}

process {
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  executor = 'awsbatch'=
  container = 'bicf/bicfbase:2.0.0'
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  cpus = 1
  memory = '1 GB'
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  withName:checkDesignFile {
    cpus = 4
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  }
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  withName:cellranger_mkfastq {
    cpus = 6
    memory = '2 GB'
  }
  withName:spaceranger_mkfastq {
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    cpus = 6
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    memory = '2 GB'
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  }
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  withName:fastqc {
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    cpus = 30
    memory = '15 GB'
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  }
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  withName:versions {
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    cpus = 6
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  }
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}