User Facing

  • Check Design File for spaces in name and file contents
  • Attempt to prevent thredding error (which appears to only happen on 256GBv1 nodes)
  • Add option for 5' GEX chemistry
  • Remove cellranger 3.0.1 as an option
  • Fix CLI MultiQC failure bug


  • Add Nextflow Tower integration into CI (GHH's profile)
  • Add new layered config folders, including prepare for awsifying
  • Update param to new standard
  • Update CI
  • Add pipeline tracking tool

Known Bugs

  • Vizapp does not yet work for Astrocyte
  • Running in CLI: to set --fastq path of file/s needs to be in quotes