# v2.2.0-indev **User Facing** * Add cellranger version 4.0.0 * Add references version 2020-A (GRCh38, mm10, mix) **Background** *Known Bugs* * Vizapp does not yet work for Astrocyte * Running in CLI: to set --fastq path of file/s needs to be in quotes # v2.1.1 **User Facing** * Check Design File for spaces in name and file contents * Attempt to prevent thredding error (which appears to only happen on 256GBv1 nodes) * Add option for 5' GEX chemistry * Remove cellranger 3.0.1 as an option * Fix CLI MultiQC failure bug **Background** * Add Nextflow Tower integration into CI (GHH's profile) * Add new layered config folders, including prepare for awsifying * Update param to new standard * Update CI * Add pipeline tracking tool *Known Bugs* * Vizapp does not yet work for Astrocyte * Running in CLI: to set --fastq path of file/s needs to be in quotes # v1.2.0 **User Facing** * Add Cellranger Version 3.1.0 * Add human/mouse farmyard reference Version 3.1.0 from 10x * Add Vizapp (shiny) * Fix mutiqc error * Add MIT License **Background** * Add CI Artifacts *Known Bugs* * Vizapp does not yet work for Astrocyte # v1.1.0 **User Facing** * Make report (multiqc) for cellranger qc output, version, references **Background** * Add changelog * Add check for space in genomeLocationFull (cellranger cannot handle) in bash script * Move module loads to process setup level code * Add Jeremy Mathews to author list * Apply style guide * Add pytests for ouptuts * Test for incompatible params (kitVersion=3 AND version=2.1.1) *Known Bugs*