Issues · BICF / Astrocyte / cellranger_count

New issue

Add cellranger v3.0.1

#1 · created Feb 06, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 2
- 0
updated Feb 07, 2019
Add cellranger 3.0.2 as option

#8 · created Mar 04, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 2
- 1
updated Mar 04, 2019
Fix config file

#7 · created Feb 15, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 1
- 0
updated Mar 05, 2019
Add cellranger references version 3.0.0 as options

#9 · created Mar 04, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 1
- 0
updated Mar 05, 2019
Add parameter for 10x kit version

#11 · created Mar 04, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 1
- 0
updated Mar 05, 2019
Make param.genomeLocation have full path

#12 · created Mar 07, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 2
- 0
updated Mar 10, 2019
Change process selector

#18 · created Mar 25, 2019 by Gervaise Henry v1.1.0 enhancement
- CLOSED
- 1
- 1
updated Apr 26, 2019
Create output directory option

#4 · created Feb 06, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 1
- 0
updated Apr 27, 2019
Remove reference genome full folder

#2 · created Feb 06, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 2
- 1
updated Apr 27, 2019
Organize output folders

#24 · created Apr 27, 2019 by Gervaise Henry v1.1.0 enhancement
- CLOSED
- 1
- 0
updated May 03, 2019
Move module load into nextflow process

#26 · created May 21, 2019 by Gervaise Henry v1.1.0 enhancement
- CLOSED
- 2
- 0
updated May 24, 2019
Add error checking for filename/folder names

#25 · created May 10, 2019 by Gervaise Henry v1.1.0 enhancement
- CLOSED
- 1
- 2
updated May 24, 2019
Test for kitVersion=3 and version=2.1.1 and exit if true

#29 · created Jul 23, 2019 by Gervaise Henry v1.1.0 enhancement
- CLOSED
- 1
- 0
updated Jul 23, 2019
Add cellranger v 3.1.0 5 of 5 tasks completed

#30 · created Jul 30, 2019 by Gervaise Henry v1.2.0 enhancement
- CLOSED
- 1
- 0
updated Jul 31, 2019
Add human mouse mix reference v3.1.0 3 of 3 tasks completed

#31 · created Jul 30, 2019 by Gervaise Henry v1.2.0 enhancement
- CLOSED
- 1
- 0
updated Jul 31, 2019
Add more artifacts to CI

#32 · created Jul 30, 2019 by Gervaise Henry v1.2.0 enhancement
- CLOSED
- 1
- 0
updated Jul 31, 2019
Exclude changes in *.md for CI

#33 · created Jul 31, 2019 by Gervaise Henry enhancement
- CLOSED
- 1
- 0
updated Jul 31, 2019
Develop CI

#14 · created Mar 11, 2019 by Gervaise Henry v1.2.0 enhancement
- CLOSED
- 1
- 2
updated Aug 15, 2019
Add MultiQC

#5 · created Feb 06, 2019 by Gervaise Henry v1.1.0 enhancement
- CLOSED
- 3
- 1
updated Aug 15, 2019
CI: mkdir ln forcing

#23 · created Apr 27, 2019 by Gervaise Henry v1.1.0 enhancement
- CLOSED
- 1
- 0
updated Aug 15, 2019