Issues · BICF / Astrocyte / cellranger_count

New issue

Generate Raw RDS file

#50 · created Jul 31, 2020 by Venkat Malladi 2.2.0 Doing enhancement
- CLOSED
- 1
- 2
updated Aug 14, 2020
Remove unnecessary files from output

#43 · created Apr 13, 2020 by Gervaise Henry v2.1.1 Doing enhancement
- CLOSED
- 0
updated Apr 14, 2020
Update params to current standards

#42 · created Apr 13, 2020 by Gervaise Henry v2.1.1 Doing enhancement
- CLOSED
- 1
- 0
updated Apr 15, 2020
Containerize

#41 · created Apr 13, 2020 by Gervaise Henry v2.1.1 Doing enhancement
- CLOSED
- 1
- 2
updated Apr 15, 2020
AWSify

#39 · created Dec 23, 2019 by Gervaise Henry v2.1.1 Doing enhancement
- CLOSED
- 1
- 0
updated Feb 21, 2020
Add 3':5' param

#38 · created Dec 05, 2019 by Gervaise Henry v2.1.1 Doing critical enhancement
- CLOSED
- 1
- 0
updated Apr 14, 2020
Exclude changes in *.md for CI

#33 · created Jul 31, 2019 by Gervaise Henry enhancement
- CLOSED
- 1
- 0
updated Jul 31, 2019
Add more artifacts to CI

#32 · created Jul 30, 2019 by Gervaise Henry v1.2.0 enhancement
- CLOSED
- 1
- 0
updated Jul 31, 2019
Add human mouse mix reference v3.1.0 3 of 3 tasks completed

#31 · created Jul 30, 2019 by Gervaise Henry v1.2.0 enhancement
- CLOSED
- 1
- 0
updated Jul 31, 2019
Add cellranger v 3.1.0 5 of 5 tasks completed

#30 · created Jul 30, 2019 by Gervaise Henry v1.2.0 enhancement
- CLOSED
- 1
- 0
updated Jul 31, 2019
Test for kitVersion=3 and version=2.1.1 and exit if true

#29 · created Jul 23, 2019 by Gervaise Henry v1.1.0 enhancement
- CLOSED
- 1
- 0
updated Jul 23, 2019
Move module load into nextflow process

#26 · created May 21, 2019 by Gervaise Henry v1.1.0 enhancement
- CLOSED
- 2
- 0
updated May 24, 2019
Add error checking for filename/folder names

#25 · created May 10, 2019 by Gervaise Henry v1.1.0 enhancement
- CLOSED
- 1
- 2
updated May 24, 2019
Organize output folders

#24 · created Apr 27, 2019 by Gervaise Henry v1.1.0 enhancement
- CLOSED
- 1
- 0
updated May 03, 2019
CI: mkdir ln forcing

#23 · created Apr 27, 2019 by Gervaise Henry v1.1.0 enhancement
- CLOSED
- 1
- 0
updated Aug 15, 2019
Change regex in astrocyte yaml

#21 · created Apr 26, 2019 by Gervaise Henry v1.1.0 enhancement
- CLOSED
- 1
- 0
updated Aug 15, 2019
Change process selector

#18 · created Mar 25, 2019 by Gervaise Henry v1.1.0 enhancement
- CLOSED
- 1
- 1
updated Apr 26, 2019
Develop CI

#14 · created Mar 11, 2019 by Gervaise Henry v1.2.0 enhancement
- CLOSED
- 1
- 2
updated Aug 15, 2019
Make param.genomeLocation have full path

#12 · created Mar 07, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 2
- 0
updated Mar 10, 2019
Add parameter for 10x kit version

#11 · created Mar 04, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 1
- 0
updated Mar 05, 2019