cellranger_count issueshttps://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count/-/issues2019-07-23T19:45:59-05:00https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count/-/issues/29Test for kitVersion=3 and version=2.1.1 and exit if true2019-07-23T19:45:59-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduTest for kitVersion=3 and version=2.1.1 and exit if truev1.1.0Jeremy MathewsJeremy Mathewshttps://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count/-/issues/28Add pytest to CI2019-08-15T00:29:22-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduAdd pytest to CIv1.1.0Jeremy MathewsJeremy Mathewshttps://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count/-/issues/27check style2019-07-10T16:55:03-05:00Holly Ruesscheck stylev1.1.0Holly RuessHolly Ruesshttps://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count/-/issues/26Move module load into nextflow process2019-05-24T14:12:00-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduMove module load into nextflow processsee cellranger_mkfastq for examplesee cellranger_mkfastq for examplev1.1.0Jeremy MathewsJeremy Mathewshttps://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count/-/issues/25Add error checking for filename/folder names2019-05-24T14:16:03-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduAdd error checking for filename/folder namesv1.1.0Jeremy MathewsJeremy Mathewshttps://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count/-/issues/24Organize output folders2019-05-03T21:47:00-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduOrganize output folderseg check design into misc foldereg check design into misc folderv1.1.0Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count/-/issues/23CI: mkdir ln forcing2019-08-15T00:30:07-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduCI: mkdir ln forcingmkdir -p
ln -sfnmkdir -p
ln -sfnv1.1.0Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count/-/issues/22Make changelog2019-08-15T00:30:07-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduMake changelogv1.1.0Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count/-/issues/21Change regex in astrocyte yaml2019-08-15T00:30:07-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduChange regex in astrocyte yamlrelated to BICF/Astrocyte/cellranger_mkfastq#16related to BICF/Astrocyte/cellranger_mkfastq#16v1.1.0Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count/-/issues/20Add DOI2019-08-15T00:29:22-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduAdd DOIASAPASAPv1.1.0Venkat MalladiVenkat Malladi2019-04-29https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count/-/issues/19Change nextflow fastq rename to iterate sample not lane2019-04-26T15:39:36-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduChange nextflow fastq rename to iterate sample not lanewith large fastq #'s per sample cellranger counts drops some with high lane #'swith large fastq #'s per sample cellranger counts drops some with high lane #'sv1.1.0Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count/-/issues/18Change process selector2019-04-26T15:39:17-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduChange process selector- remove redundant process name out of tag
- update to fix: **WARN: Process configuration syntax $processName has been deprecated -- Replace `process.$count301 = <value>` with a process selector**- remove redundant process name out of tag
- update to fix: **WARN: Process configuration syntax $processName has been deprecated -- Replace `process.$count301 = <value>` with a process selector**v1.1.0Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count/-/issues/5Add MultiQC2019-08-15T00:29:43-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduAdd MultiQCv1.1.0Jeremy MathewsJeremy Mathews