Commits · publish_2.1.1 · BICF / Astrocyte / cellranger_count

21 Jun, 2020 16 commits
- Merge branch 'develop' into 'master' · 92f1396c
  Gervaise Henry authored Jun 21, 2020
```
Fix multi sample, local ulimit set, v2.1.1

See merge request !74
```
  92f1396c
- Fix multi sample, local ulimit set, v2.1.1 · 079739df
  Gervaise Henry authored Jun 21, 2020
  
  079739df
- Merge branch 'develop' into 'master' · e913ede6
  Gervaise Henry authored Jun 21, 2020
```
Develop

See merge request !73
```
  e913ede6
- Fix multiqc config · 67eb6554
  Gervaise Henry authored Jun 21, 2020
  
  67eb6554
- Fix module load and ulimits · 3d5b1095
  Gervaise Henry authored Jun 21, 2020
  
  3d5b1095
- Version 2.1.0 · 9a2e93c1
  Gervaise Henry authored Jun 21, 2020
  
  9a2e93c1
- Fix cluster process passing · 80771512
  Gervaise Henry authored Jun 21, 2020
  
  80771512
- Fix version and references script passing · 7bc7c3fd
  Gervaise Henry authored Jun 21, 2020
  
  7bc7c3fd
- Copy filename_checkScript int each input for cellranger processes · 2622d647
  Gervaise Henry authored Jun 21, 2020
  
  2622d647
- Make script files inputs · 986b1246
  Gervaise Henry authored Jun 21, 2020
  
  986b1246
- Merge branch 'de-containerize' into 'develop' · bca7b52f
  Gervaise Henry authored Jun 21, 2020
```
Update configs folder name

See merge request !72
```
  bca7b52f
- Update configs folder name · a455db0d
  Gervaise Henry authored Jun 21, 2020
  
  a455db0d
- Merge branch 'de-containerize' into 'develop' · 092561b6
  Gervaise Henry authored Jun 21, 2020
```
De containerize

See merge request !71
```
  092561b6
- Remove quiet option from nextflow run ci · 3530bc3b
  Gervaise Henry authored Jun 21, 2020
  
  3530bc3b
- De-containerize (remove cellranger 2.1.1 because no BioHPC module) · 554ef719
  Gervaise Henry authored Jun 21, 2020
  
  554ef719
- Major cleanup update · 5677b2e2
  Gervaise Henry authored Jun 21, 2020
  
  5677b2e2
25 May, 2020 2 commits
- Fix conflicts · 0e5c69c2
  Gervaise Henry authored May 25, 2020
  
  0e5c69c2
- Add singularity to astrocyte · 4da781e7
  Gervaise Henry authored May 25, 2020
  
  4da781e7
26 Apr, 2020 3 commits
- Merge branch '45-bug.multiqc' into 'develop' · b5306c4a
  Gervaise Henry authored Apr 26, 2020
```
Remove multiqc module

Closes #45

See merge request !69
```
  b5306c4a
- Update CHANGELOG.md · bae2fcb5
  Gervaise Henry authored Apr 26, 2020
  
  bae2fcb5
- Remove multiqc module · 6fca166f
  Gervaise Henry authored Apr 26, 2020
  
  6fca166f
25 Apr, 2020 10 commits
- Merge branch 'track.pipeline' into 'develop' · f32d0160
  Gervaise Henry authored Apr 25, 2020
```
Track.pipeline

See merge request !68
```
  f32d0160
- Fix erroneous ci flags · 2838803e
  Gervaise Henry authored Apr 25, 2020
  
  2838803e
- Convert tracking to curl · 49d27e42
  Gervaise Henry authored Apr 25, 2020
  
  49d27e42
- Move handlers to bottom of .nf · c44a8e26
  Gervaise Henry authored Apr 25, 2020
  
  c44a8e26
- Test println in onComplete · 9962226e
  Gervaise Henry authored Apr 25, 2020
  
  9962226e
- Fix astrocyte bool · 13a0f3d8
  Gervaise Henry authored Apr 25, 2020
  
  13a0f3d8
- Rearrange scripts · 30e24505
  Gervaise Henry authored Apr 25, 2020
  
  30e24505
- Move onError and onComplete scripts outside of handlers · 400f7a82
  Gervaise Henry authored Apr 25, 2020
  
  400f7a82
- Add status and onError, on Complete updates · 73181ef6
  Gervaise Henry authored Apr 25, 2020
  
  73181ef6
- Add trackStart process · 406b47be
  Gervaise Henry authored Apr 25, 2020
  
  406b47be
20 Apr, 2020 4 commits
- Update versions · f12097e3
  Gervaise Henry authored Apr 20, 2020
  
  f12097e3
- Merge branch 'develop' into 'master' · 9b8d1354
  Gervaise Henry authored Apr 20, 2020
```
Develop

See merge request !67
```
  9b8d1354
- Merge branch '44-fix.tread.error' into 'develop' · f5d459f2
  Gervaise Henry authored Apr 20, 2020
```
Add ulimit -u to all cellranger processes

Closes #44

See merge request !66
```
  f5d459f2
- Add ulimit -u to all cellranger processes · 4c9062b8
  Gervaise Henry authored Apr 20, 2020
  
  4c9062b8
16 Apr, 2020 5 commits
- Update astrocyte_pkg.yml · d2583f2c
  Gervaise Henry authored Apr 16, 2020
  
  d2583f2c
- Version 2.0.1 · 4dba263c
  Gervaise Henry authored Apr 16, 2020
  
  4dba263c
- Add singularity module to astrocyte yml · 1f4c9d30
  Gervaise Henry authored Apr 16, 2020
  
  1f4c9d30
- Merge branch 'master' into 'develop' · 17ef81b9
  Gervaise Henry authored Apr 16, 2020
```
Drop indev in version, finish adding aws details

See merge request !65
```
  17ef81b9
- Drop indev in version, finish adding aws details · a1d75b8a
  Gervaise Henry authored Apr 16, 2020
  
  a1d75b8a