From e5b53e049d6ab7bd2c20e753a38f5f3c06bac3f1 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 20 Nov 2020 10:27:16 -0600
Subject: [PATCH] Add library options to astrocyte yml
---
astrocyte_pkg.yml | 3 +++
1 file changed, 3 insertions(+)
diff --git a/astrocyte_pkg.yml b/astrocyte_pkg.yml
index 119d8c3..d1cc705 100755
--- a/astrocyte_pkg.yml
+++ b/astrocyte_pkg.yml
@@ -140,9 +140,12 @@ workflow_parameters:
default: 'auto'
choices:
- ['auto', 'Auto Detect']
+ - ['3GEX', '3prime GEX Auto (3prime Gene Expression)']
- ['3GEXv3', '3prime GEX v3 (3prime Gene Expression)']
- ['3GEXv2', '3prime GEX v2 (3prime Gene Expression)']
- ['5GEX', '5prime GEX Auto (5prime Gene Expression)']
+ - ['5GEXPE', '5prime GEX both R1 and R2 used for alignment (5prime Gene Expression)']
+ - ['5GEXSE', '5prime GEX only R2 used for alignment (5prime Gene Expression)']
required: true
description: |
10x single cell gene expression chemistry version (only used in cellranger version 3.x).
--
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