diff --git a/workflow/nextflow.config b/workflow/nextflow.config
index 527b3ca62cada28034d668dc1aba67936a137bd3..aea0232cfae16f0d914bb3b372ab8dae54701003 100644
--- a/workflow/nextflow.config
+++ b/workflow/nextflow.config
@@ -1,12 +1,12 @@
 profiles {
   biohpc_local {
-    includeConfig 'conf/biohpc_local.config'
+    includeConfig 'workflow/conf/biohpc_local.config'
   }
   biohpc_cluster {
-    includeConfig 'conf/biohpc_cluster.config'
+    includeConfig 'workflow/conf/biohpc_cluster.config'
   }
   aws {
-    includeConfig 'conf/aws.config'
+    includeConfig 'workflow/conf/aws.config'
   }
 }