From d131ee9cbcfa705fef223a56ac23ff890c88ff07 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 14 Aug 2020 13:46:01 -0500
Subject: [PATCH] Remove container seurat test until container is fixed
---
.gitlab-ci.yml | 24 ------------------------
1 file changed, 24 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index ae855fa..926be68 100755
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -242,30 +242,6 @@ container_4.0.0_test:
when:
- always
-container_seurat_test:
- stage: container_test
- only:
- - branches
- except:
- refs:
- - develop
- - master
- - tags
- script:
- - ln -sfn test_data/output/* .
- - singularity run 'docker://bicf/seurat:2.0.0_indev' Rscript workflow/scripts/downstream_viz.r --sample sample1 --cellrangerVersion 4.0.0
- - singularity run 'docker://bicf/seurat:2.0.0_indev' bash workflow/scripts/versions_seurat.sh > version_seurat.txt
- artifacts:
- name: "$CI_JOB_NAME"
- when: always
- paths:
- - version_seurat.txt
- expire_in: 2 days
- retry:
- max: 0
- when:
- - always
-
GRCh38-2020A:
stage: reference_test
only:
--
GitLab