diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index ae855fac1101c0f73f495fb2451768a8337e848f..926be68afcc15ffb2a3fa60cd4118b020deebbee 100755 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -242,30 +242,6 @@ container_4.0.0_test: when: - always -container_seurat_test: - stage: container_test - only: - - branches - except: - refs: - - develop - - master - - tags - script: - - ln -sfn test_data/output/* . - - singularity run 'docker://bicf/seurat:2.0.0_indev' Rscript workflow/scripts/downstream_viz.r --sample sample1 --cellrangerVersion 4.0.0 - - singularity run 'docker://bicf/seurat:2.0.0_indev' bash workflow/scripts/versions_seurat.sh > version_seurat.txt - artifacts: - name: "$CI_JOB_NAME" - when: always - paths: - - version_seurat.txt - expire_in: 2 days - retry: - max: 0 - when: - - always - GRCh38-2020A: stage: reference_test only: