diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 67735f7014f1c545d419db773e61ee21edcd8440..1e339716c435f74c0cf4d60eb083499f81e3ae5a 100755 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -16,12 +16,16 @@ astrocyte_check: script: - astrocyte_cli check ../cellranger_count -simple_mu.cr2v2ref1.2.0: +run_mu.cr2v2ref1.2.0: stage: run + except: + - tags script: - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/mu.v2s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/mu.v2s2r10k/design.csv" --genome 'mm10-1.2.0' --kitVersion 'two' --version '2.1.1' -simple_hu.cr3v3ref3.0.0: +run_hu.cr3v3ref3.0.0: stage: run + except: + - tags script: - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'three' --version '3.0.2'