From c5a4362aead80312a35d004c71151c08bb4a9fe2 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 14 Aug 2020 14:39:34 -0500
Subject: [PATCH] Fix 2 sample CI genome param
---
.gitlab-ci.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 926be68..8dfee6c 100755
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -345,7 +345,7 @@ mm10-3.0.0:
- master
- tags
script:
- - nextflow run workflow/main.nf -profile biohpc,cluster --fastq "test_data/hu.v3s2r10k/*.fastq.gz" --designFile "test_data/hu.v3s2r10k/design.csv" --genome 'GRCh38-2020A' --kitVersion 'auto' --version '4.0.0' --ci true
+ - nextflow run workflow/main.nf -profile biohpc,cluster --fastq "test_data/hu.v3s2r10k/*.fastq.gz" --designFile "test_data/hu.v3s2r10k/design.csv" --genome 'GRCh38-2020-A' --kitVersion 'auto' --version '4.0.0' --ci true
- pytest -m count400
artifacts:
name: "$CI_JOB_NAME"
--
GitLab