diff --git a/workflow/main.nf b/workflow/main.nf index 99f81a3ef93f63fee480ab52fa896cde1a5d5c20..ae4f6eb919b745033a2b478d5d13732bbcae2b2d 100755 --- a/workflow/main.nf +++ b/workflow/main.nf @@ -8,7 +8,7 @@ params.fastq = "$baseDir/../test_data/*.fastq.gz" params.designFile = "$baseDir/../test_data/design.csv" params.genome = 'GRCh38' params.genomes = [] -params.refIndex = params.genome ? params.genomes[ params.genome ].ref ?: false : false +params.refIndex = params.genomes[ params.genome ].ref params.expectCells = 10000 params.forceCells = 0