From b0677edf78d915356fe5e0ab861d30afdaa5a7de Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 12 Mar 2019 13:08:09 -0500
Subject: [PATCH] Set queues instead of memory in main.nf until Astrocyte
update to use custom configs
---
workflow/main.nf | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index 7ed5bca..c12e30d 100755
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -104,7 +104,7 @@ chemistryParam301 = chemistryParam
chemistryParam302 = chemistryParam
process count211 {
- memory '120 GB'
+ queue '128GB,256GB,256GBv1,384GB'
tag "count211-$sample"
publishDir "$outDir/${task.process}", mode: 'copy'
@@ -139,7 +139,7 @@ process count211 {
}
process count301 {
- memory '120 GB'
+ queue '128GB,256GB,256GBv1,384GB'
tag "count301-$sample"
publishDir "$outDir/${task.process}", mode: 'copy'
@@ -175,7 +175,7 @@ process count301 {
}
process count302 {
- memory '120 GB'
+ queue '128GB,256GB,256GBv1,384GB'
tag "count302-$sample"
publishDir "$outDir/${task.process}", mode: 'copy'
--
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