From 9fc2b8944f751ed2acd9ce8dbcd3247014cb07a0 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Sun, 10 Mar 2019 15:25:19 -0500
Subject: [PATCH] Change kitVersion from numeric to string value
---
workflow/conf/biohpc.config | 6 +++---
workflow/main.nf | 2 +-
2 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/workflow/conf/biohpc.config b/workflow/conf/biohpc.config
index 3b0eb73..71409ac 100755
--- a/workflow/conf/biohpc.config
+++ b/workflow/conf/biohpc.config
@@ -57,13 +57,13 @@ params {
'auto' {
param = 'auto'
}
- '1' {
+ 'one' {
param = 'SC3Pv1'
}
- '2' {
+ 'two' {
param = 'SC3Pv2'
}
- '3' {
+ 'three' {
param = 'SC3Pv3'
}
}
diff --git a/workflow/main.nf b/workflow/main.nf
index bb2544a..c9146f6 100755
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -11,7 +11,7 @@ params.genomes = []
params.genomeLocation = params.genome ? params.genomes[ params.genome ].loc ?: false : false
params.expectCells = 10000
params.forceCells = 0
-params.kitVersion = '3'
+params.kitVersion = 'three'
params.chemistry = []
params.chemistryParam = params.kitVersion ? params.chemistry[ params.kitVersion ].param ?: false : false
params.version = '3.0.2'
--
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